Information for 9-CHCGGTGTCCTBVTCC (Motif 17)

G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
Reverse Opposite:
C T A G A C T G C G T A A C T G T C A G C G T A C T A G A T C G C G T A A G T C C G T A G A T C G A T C C T A G C A G T A C T G
p-value:1e-11
log p-value:-2.614e+01
Information Content per bp:1.795
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.6 +/- 16.3bp
Average Position of motif in Background46.1 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CHCGGTGTCCTBVTCC
GRACAGWMTGTYCTB----
 A C G T A C G T A C G T G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G A C G T A C G T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CHCGGTGTCCTBVTCC
AGNACAGNCTGTTCTN----
 A C G T A C G T A C G T A C G T G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CHCGGTGTCCTBVTCC----
----GAGCCCTTGTCCCTAA
 G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CHCGGTGTCCTBVTCC
AGNACANNNTGTNCTN----
 A C G T A C G T A C G T A C G T G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CHCGGTGTCCTBVTCC
----GTGACCTT----
 G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CHCGGTGTCCTBVTCC
-----TGACCTYA---
 G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

Ar/MA0007.3/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CHCGGTGTCCTBVTCC
GGGAACACGGTGTACCC----
 A C G T A C G T A C G T A C G T A C G T G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C A C G T A C G T A C G T A C G T

ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CHCGGTGTCCTBVTCC------
CCTCATGGTGYCYTWYTCCCTTGTG
 A C G T A C G T A C G T G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G A T C A G C T T G A C G C T A A G C T C A T G A C T G A C G T T C A G A G T C G A T C G A C T A G C T G C T A A G T C A G C T A G T C G A T C A T G C A G C T G A C T C A T G A C G T A T C G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CHCGGTGTCCTBVTCC
GVACAGNMTGTYCTB----
 A C G T A C G T A C G T G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T A C G T A C G T A C G T

NR3C1/MA0113.3/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CHCGGTGTCCTBVTCC
GGGTACATAATGTTCCC----
 A C G T A C G T A C G T A C G T A C G T G T A C G C T A A G T C C T A G C T A G A C G T A C T G A C G T A T G C G A T C A C G T A G T C T A G C A C G T A G T C G A T C
C T A G C T A G C T A G C G A T C G T A A T G C C T G A G A C T C G T A C T G A G A C T A T C G A C G T G C A T G A T C G A T C G T A C A C G T A C G T A C G T A C G T