Information for 9-ATTCARCACAGAC (Motif 15)

C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C
Reverse Opposite:
C T A G A C G T A G T C A C G T A C T G C A G T A C T G G A C T A C G T A C T G C G T A T C G A A C G T
p-value:1e-11
log p-value:-2.614e+01
Information Content per bp:1.820
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 36.5bp
Average Position of motif in Background51.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATTCARCACAGAC
ACATTCATGACACG-
 A C G T A C G T C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:ATTCARCACAGAC----
-------CCAGACRSVB
 C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATTCARCACAGAC
TGACANARRCCAGRC
 A C G T A C G T C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ATTCARCACAGAC-
----ATGCCAGACN
 C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:ATTCARCACAGAC--
-------CCAGACAG
 C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:ATTCARCACAGAC--
-------BCAGACWA
 C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ATTCARCACAGAC------
--CAAATCCAGACATCACA
 C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ATTCARCACAGAC--
YTAATTRAWWCCAGATGT
 A C G T A C G T A C G T C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----ATTCARCACAGAC
AATCAATTCAATAATT--
 A C G T A C G T A C G T A C G T A C G T C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------ATTCARCACAGAC
GACCACATTCATACAAT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T C G A T A G T C C G T A C T G A T A G C G C T A A G T C C G T A A C T G C G T A A G T C
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T A C G T A C G T