Information for 5-GAATAAAGATGCT (Motif 10)

A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
Reverse Opposite:
C T G A A C T G G T A C C G T A A C G T G T A C A C G T A C G T A G C T C T G A A C G T A C G T A G T C
p-value:1e-11
log p-value:-2.720e+01
Information Content per bp:1.840
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 23.5bp
Average Position of motif in Background44.6 +/- 8.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAATAAAGATGCT
GGAACAAAGR----
 A C G T A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAATAAAGATGCT
AAACAAACATTC-
 A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAATAAAGATGCT
--ATGMATATDC-
 A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GAATAAAGATGCT
TACTGGAAAAAAAA----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAATAAAGATGCT
--ATGAATATTC-
 A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAATAAAGATGCT
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAATAAAGATGCT
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GAATAAAGATGCT
ACTATGAATGAATGAT--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAATAAAGATGCT
AAAACAAAGG----
 A C G T A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAATAAAGATGCT
CCAATAAAAA----
 A C G T A C T G C G T A C G T A A G C T C T G A C G T A G T C A A C T G G T C A A C G T A C T G G T A C A G C T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T