Information for 1-RCCACCAGAKGGC (Motif 1)

T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C
Reverse Opposite:
C A T G G T A C G T A C G T A C A G C T G T A C A G C T C T A G A T C G A C G T A C T G A C T G A G C T
p-value:1e-26
log p-value:-6.173e+01
Information Content per bp:1.708
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif4.84%
Number of Background Sequences with motif106.9
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets46.8 +/- 25.4bp
Average Position of motif in Background54.9 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--RCCACCAGAKGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--RCCACCAGAKGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:RCCACCAGAKGGC-------
GCCASCAGGGGGCGCYVNNG
 T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:RCCACCAGAKGGC
---AACAGATGGC
 T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

ZNF354C/MA0130.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RCCACCAGAKGGC
ATCCAC--------
 A C G T T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------RCCACCAGAKGGC
CATAAGACCACCATTAC--
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RCCACCAGAKGGC
---AACAGATGGT
 T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C
A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RCCACCAGAKGGC
NWAACCACADNN----
 A C G T A C G T A C G T T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RCCACCAGAKGGC
CACCCCCGGGGGGG
 A C G T T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:RCCACCAGAKGGC
-VNAVCAGCTGGC
 T C G A G T A C A G T C C G T A A T G C G A T C C T G A A C T G T C G A A C T G A C T G A C T G G T A C
A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C