Information for 4-GATTTATGTCCCT (Motif 8)

C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T
Reverse Opposite:
C G T A C T A G C T A G A C T G G T C A G T A C C G T A A C G T C G T A C G T A C G T A A C G T G A T C
p-value:1e-12
log p-value:-2.902e+01
Information Content per bp:1.825
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.0 +/- 17.6bp
Average Position of motif in Background33.2 +/- 39.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GATTTATGTCCCT
TGATTTATGGCC--
 A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GATTTATGTCCCT
NTGATTTATGGCC--
 A C G T A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GATTTATGTCCCT
TGATTTATGGCC--
 A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GATTTATGTCCCT
TGATTTATGGC---
 A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GATTTATGTCCCT-
NAATTTTATTACCNNN
 A C G T A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

PH0073.1_Hoxc9/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GATTTATGTCCCT-
NNAATTAATGACCNNN
 A C G T A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GATTTATGTCCCT-
NAATTTTATTACCTNN
 A C G T A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GATTTATGTCCCT
DGWTTTATGRCN--
 A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GATTTATGTCCCT
TGATTRATGGCY--
 A C G T C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GATTTATGTCCCT
-TTTTATGGCTN-
 C A T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G A C G T A G T C A G T C A G T C G A C T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T