Information for 4-AGATGGCAGT (Motif 6)

C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T
Reverse Opposite:
T G C A G A T C A C G T A C T G G T A C G T A C G T C A G A C T A T G C C G A T
p-value:1e-13
log p-value:-3.127e+01
Information Content per bp:1.822
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.22%
Number of Background Sequences with motif222.5
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets49.3 +/- 25.5bp
Average Position of motif in Background47.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGATGGCAGT
CAAGATGGCGGC
 A C G T A C G T C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGATGGCAGT
AACAGATGGC---
 A C G T A C G T A C G T C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGATGGCAGT
CAAGATGGCGGC
 A C G T A C G T C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AGATGGCAGT---
---TGGCAGTTGN
 C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGATGGCAGT
GGTTGGCAT-
 C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGATGGCAGT
ARNTGACA--
 C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGATGGCAGT------
NNNTGGCAGTTGGTNN
 C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------AGATGGCAGT--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGATGGCAGT
AACAGATGGT---
 A C G T A C G T A C G T C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGATGGCAGT
-CTTGGCAA-
 C G T A T A C G C T G A A C G T C A T G A C T G G T A C C G T A C A T G A C G T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T