Information for 2-GYTCTGTGTRCACAGT (Motif 3)

A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T
Reverse Opposite:
G T C A A G T C A C G T C T A G C G A T A C T G A G T C C G T A A G T C C G T A A G T C C G T A C A T G G C T A T C G A A G T C
p-value:1e-15
log p-value:-3.668e+01
Information Content per bp:1.776
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 20.4bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GYTCTGTGTRCACAGT---
--NSTGTTTRCWCAGBNNN
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GYTCTGTGTRCACAGT--
-NTNTATGTGCACATNNN
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

MTF1/MA0863.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GYTCTGTGTRCACAGT
GTGCCGTGTGCAAA--
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GYTCTGTGTRCACAGT
----TGTTTACTTAGG
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GYTCTGTGTRCACAGT
CCATTGTATGCAAAT-
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GYTCTGTGTRCACAGT
-BSNTGTTTACWYWGN
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T
A C G T A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GYTCTGTGTRCACAGT
GGGCCGTGTGCAAAAA
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

FOXA1/MA0148.3/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GYTCTGTGTRCACAGT
TCCATGTTTACTTTG-
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GYTCTGTGTRCACAGT--
-NNGTATGTGCACATNNN
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GYTCTGTGTRCACAGT
--CNTGTTTACATA--
 A C T G A G C T C G A T G T A C A C G T A C T G A C G T C T A G C G A T C T A G G T A C C G T A A G T C C G T A A C T G A C G T
A C G T A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T