Information for 3-GYCGTAAANB (Motif 2)

T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T
Reverse Opposite:
T G C A T G A C C G A T A C G T A G C T T C G A G A T C C A T G C T G A A G T C
p-value:1e-18
log p-value:-4.210e+01
Information Content per bp:1.622
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.44%
Number of Background Sequences with motif679.0
Percentage of Background Sequences with motif1.46%
Average Position of motif in Targets56.1 +/- 24.7bp
Average Position of motif in Background50.4 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----GYCGTAAANB--
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----GYCGTAAANB---
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXC11/MA0651.1/Jaspar

Match Rank:3
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GYCGTAAANB
GGTCGTAAAAT
 A C G T T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GYCGTAAANB-
NGYCATAAAWCH
 A C G T T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----GYCGTAAANB--
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

Hoxa11/MA0911.1/Jaspar

Match Rank:6
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GYCGTAAANB-
GGTCGTAAAATT
 A C G T T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXD11/MA0908.1/Jaspar

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GYCGTAAANB
GTCGTAAAAA
 T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GYCGTAAANB
GTCGTAAAAT
 T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----GYCGTAAANB---
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GYCGTAAANB
GGTCGTAAAAA
 A C G T T C A G G A C T G T A C C T A G A G C T C T G A C G T A C G T A A C T G A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A