Information for 3-AGGACCGGCATCTTHG (Motif 13)

C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G
Reverse Opposite:
A G T C C A G T C G T A C G T A A C T G C T G A A C G T A C T G A T G C A G T C A C T G C T A G A C G T A T G C A T G C A G C T
p-value:1e-9
log p-value:-2.242e+01
Information Content per bp:1.774
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 14.4bp
Average Position of motif in Background72.4 +/- 16.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGGACCGGCATCTTHG
---GCCGCCATCTTG-
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G
A C G T A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGGACCGGCATCTTHG
---GCNGCCATCTTG-
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G
A C G T A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGGACCGGCATCTTHG-
-NNGGCGACACCTCNNN
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G A C G T
A C G T A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.49
Offset:10
Orientation:forward strand
Alignment:AGGACCGGCATCTTHG----
----------YCTTTGTTCC
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

GCM1/MA0646.1/Jaspar

Match Rank:5
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:AGGACCGGCATCTTHG
-GTACCCGCATN----
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G
A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.49
Offset:7
Orientation:forward strand
Alignment:AGGACCGGCATCTTHG
-------CAAGCTT--
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:7
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AGGACCGGCATCTTHG
NAGATWNBNATCTNN-
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C A C G T

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.48
Offset:8
Orientation:forward strand
Alignment:AGGACCGGCATCTTHG--
--------AACCTTATAT
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.48
Offset:10
Orientation:reverse strand
Alignment:AGGACCGGCATCTTHG----
----------CCTTTGATGT
 C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--AGGACCGGCATCTTHG
ADGGYAGYAGCATCT---
 A C G T A C G T C T G A A T C G A T C G G T C A G A T C G T A C C T A G A T C G G T A C C G T A A G C T A G T C A C G T A C G T G C T A A C T G
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T