Information for 5-GCTCCGCTGC (Motif 11)

A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C
Reverse Opposite:
A C T G G A T C C G T A A T C G G T A C A T C G C T A G C G T A T A C G A G T C
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.833
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.76%
Number of Background Sequences with motif234.7
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets49.7 +/- 23.8bp
Average Position of motif in Background51.3 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCTCCGCTGC
GCTCCG----
 A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GCTCCGCTGC----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------GCTCCGCTGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCTCCGCTGC-
-CGCAGCTGCG
 A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C A C G T
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

Sp1(Zf)/Promoter/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCTCCGCTGC-
GGCCCCGCCCCC
 A C G T A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C A C G T
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCTCCGCTGC--
GCTCCGCCCMCY
 A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C A C G T A C G T
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCTCCGCTGC
----NGCTN-
 A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCTCCGCTGC------
AATCGCACTGCATTCCG
 A C G T A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCTCCGCTGC-
-----GCTTCC
 A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCTCCGCTGC
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G A T A G T C A T G C C A T G A T G C G C A T C T A G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C