Information for 1-GGCCGTTTGGCCT (Motif 1)

A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T
Reverse Opposite:
C T G A A C T G A C T G G T A C G A T C C G T A G T C A C G T A A G T C T A C G A T C G A T G C G T A C
p-value:1e-21
log p-value:-4.839e+01
Information Content per bp:1.829
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.9 +/- 21.9bp
Average Position of motif in Background54.8 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rarb/MA0857.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGCCGTTTGGCCT--
TGACCTTTTGACCTTT
 A C G T A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T A C G T A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGCCGTTTGGCCT
BRRCVGTTDN----
 A C G T A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T A C G T A C G T

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCCGTTTGGCCT
GGCVGTTR-----
 A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T
C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GGCCGTTTGGCCT-
TTGACCTTTTGACCTT
 A C G T A C G T A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

RARA/MA0729.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GGCCGTTTGGCCT-
CATTGACCTTTTGACCTC
 A C G T A C G T A C G T A C G T A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T A C G T
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCCGTTTGGCCT-
TGACCTTTGCCCTA
 A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGCCGTTTGGCCT-
TGACCTTTTGACCTC
 A C G T A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T A C G T
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGCCGTTTGGCCT
--CCGATTGGCT-
 A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCCGTTTGGCCT
NNNTGGCAGTTGGTNN-
 A C G T A C G T A C G T A C G T A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCCGTTTGGCCT--
TGACCTTTGCCCTAN
 A C T G A T C G A T G C A G T C C T A G A C G T A C G T A C G T C T A G A C T G A G T C A G T C A G C T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C