Information for 17-ASAGACACAC (Motif 42)

C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C
Reverse Opposite:
A T C G A G C T C A T G A C G T A C T G A C G T A T G C C G A T T A G C G A C T
p-value:1e-4
log p-value:-9.426e+00
Information Content per bp:1.678
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif9.91%
Number of Background Sequences with motif2255.9
Percentage of Background Sequences with motif4.74%
Average Position of motif in Targets39.0 +/- 23.0bp
Average Position of motif in Background48.7 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ASAGACACAC----
AAACAGACAAAGGAAT
 A C G T A C G T C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ASAGACACAC
CCAGACRSVB
 C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ASAGACACAC
BCAGACWA--
 C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ASAGACACAC
CCAGACAG--
 C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ASAGACACAC---
AAAGTAAACAAAAATT
 A C G T A C G T A C G T C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C A C G T A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ASAGACACAC-
-AAAACAAAGG
 C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----ASAGACACAC--
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

FOXP1/MA0481.1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----ASAGACACAC
CAAAAGTAAACAAAG
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:ASAGACACAC
----ACAAAG
 C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----ASAGACACAC
AGGTGHCAGACA---
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G C G T A T A C G C G T A G T A C C G T A G T A C C T G A T A G C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T