Information for 2-TGCAGACGGGATATTG (Motif 3)

A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C G T C G T A A G C T A G T C A G T C A G T C C T A G A G C T G T A C A C G T A C T G G T A C C G T A
p-value:1e-10
log p-value:-2.431e+01
Information Content per bp:1.908
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 22.6bp
Average Position of motif in Background81.8 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGCAGACGGGATATTG
-CCAGACRSVB-----
 A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGCAGACGGGATATTG
-CCAGACAG-------
 A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX8/MA0868.1/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGCAGACGGGATATTG--
--AACACTGCACATTGTT
 A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G A C G T A C G T
A C G T A C G T C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TGCAGACGGGATATTG
NNTTTGCACACGGCCC----
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C A C G T A C G T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGCAGACGGGATATTG
TTTGCACACGGCAC----
 A C G T A C G T A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:TGCAGACGGGATATTG
----NACAGGAAAT--
 A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----TGCAGACGGGATATTG
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.50
Offset:4
Orientation:forward strand
Alignment:TGCAGACGGGATATTG
----NACAGGAAAT--
 A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
A C G T A C G T A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:TGCAGACGGGATATTG
----ANCAGGATGT--
 A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T

ETS1/MA0098.3/Jaspar

Match Rank:10
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TGCAGACGGGATATTG
-----ACCGGAAGTG-
 A C G T A C T G G T A C C G T A A C T G C T G A A G T C C T A G A C T G A C T G C T G A A C G T G T C A A C G T A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C T G A T A G C T G A C A T C G A C T G C G T A C G T A T C A G A G C T T C A G A C G T