Information for 11-GRAAKAKTGTRSC (Motif 23)

A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C
Reverse Opposite:
C T A G A T C G A G T C C G T A A G T C C G T A T G A C A C G T G T C A A C G T A C G T A G T C A G T C
p-value:1e-7
log p-value:-1.679e+01
Information Content per bp:1.831
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.8 +/- 25.4bp
Average Position of motif in Background55.8 +/- 2.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GRAAKAKTGTRSC--
GHTACAWTGTADCHR
 A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C A C G T A C G T
C T A G G T C A G C A T C G T A A T G C G C T A C G T A C G A T T C A G G C A T C G T A C G A T G T A C G C T A C T G A

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GRAAKAKTGTRSC--
GHWACAWTGTWDCWA
 A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C A C G T A C G T
C T A G G C T A G C A T G C T A G A T C G C T A G C T A C G A T C T A G G C A T C G T A C G A T G A T C G C T A C G T A

PB0175.1_Sox4_2/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GRAAKAKTGTRSC---
GGAAAAATTGTTAGGAA
 A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GRAAKAKTGTRSC
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GRAAKAKTGTRSC
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GRAAKAKTGTRSC
--CTCATTGTC--
 A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GRAAKAKTGTRSC---
AANTTATTGTTCTNNA
 A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GRAAKAKTGTRSC
-----ATTGTT--
 A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GRAAKAKTGTRSC--
NANTGGAAAAANTGAGTCAN
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GRAAKAKTGTRSC---
-----AATGTATCAAT
 A C T G C T A G C G T A C G T A A C G T C G T A A C T G A C G T A C T G A C G T C T A G T A C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T