Information for 9-KSCCTCTAGAGGC (Motif 19)

A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C
Reverse Opposite:
A T C G A G T C A G T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G T A C G A T G C T G C A
p-value:1e-9
log p-value:-2.077e+01
Information Content per bp:1.774
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif14.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.3 +/- 19.6bp
Average Position of motif in Background33.8 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------KSCCTCTAGAGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----KSCCTCTAGAGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----KSCCTCTAGAGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--KSCCTCTAGAGGC
BCNGGTTCTAGANCN
 A C G T A C G T A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C
A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:KSCCTCTAGAGGC
-GNCTATAAAAGG
 A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:KSCCTCTAGAGGC
--TGTCTAGACG-
 A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C
A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:KSCCTCTAGAGGC
---BTBRAGTGSN
 A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:KSCCTCTAGAGGC-
--TCCCNNGGGACN
 A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C A C G T
A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:KSCCTCTAGAGGC
---CTYRAGTGSY
 A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

PB0090.1_Zbtb12_1/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---KSCCTCTAGAGGC-
CTAAGGTTCTAGATCAC
 A C G T A C G T A C G T A C G T A T C G A G T C G A T C A G C T A G T C A G C T C T G A A C T G C T G A C T A G C T A G A T G C A C G T
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C