Information for 1-CCACMAGGTGGCR (Motif 1)

A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G
Reverse Opposite:
A G T C C T A G A G T C A G T C G T C A A G T C A G T C A C G T C A G T A T C G G C A T A C T G A C T G
p-value:1e-43
log p-value:-1.013e+02
Information Content per bp:1.811
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.16%
Number of Background Sequences with motif58.4
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets47.2 +/- 22.8bp
Average Position of motif in Background55.1 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CCACMAGGTGGCR---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CCACMAGGTGGCR------
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---CCACMAGGTGGCR----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCACMAGGTGGCR-----
-NNNAAGGGGGCGGGNNN
 A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCACMAGGTGGCR
--AACAGATGGC-
 A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCACMAGGTGGCR
DCHCAGCAGGRGGCC
 A C G T A C G T A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCACMAGGTGGCR
CACAGCAGGGGG--
 A C G T A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCACMAGGTGGCR--
---CAAGATGGCGGC
 A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T
A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCACMAGGTGGCR--
---CAAGATGGCGGC
 A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCACMAGGTGGCR
NCNCAGCGGGGGGTC
 A C G T A C G T A G T C A G T C C G T A A T G C G T C A C G T A A C T G T C A G A C G T A C T G A C T G A G T C C T A G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C