Information for 5-CACTACACGA (Motif 4)

A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A
Reverse Opposite:
C G A T A G T C C T A G A C G T A C T G A C G T C G T A A C T G C A G T A C T G
p-value:1e-13
log p-value:-3.077e+01
Information Content per bp:1.862
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif17.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.8 +/- 29.0bp
Average Position of motif in Background53.4 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CACTACACGA
NSCACTYVAV--
 A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CACTACACGA--
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CACTACACGA
RSCACTYRAG--
 A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CACTACACGA
AASCACTCAA---
 A C G T A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CACTACACGA--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CACTACACGA-
ATGTCACAACAACAC
 A C G T A C G T A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CACTACACGA
CCACTTGAA--
 A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CACTACACGA----------
TGTCATTACACGTGGAAGGCGGT
 A C G T A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C T A G G A C T A T G C C T A G G A C T C A G T T G C A G T A C C T G A A G T C T C A G G A C T A C T G A C T G G T C A C T G A C T A G A T C G G T A C C T A G C T A G G C A T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CACTACACGA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CACTACACGA
ATCACCCCAT--
 A C G T A C G T A G T C G C T A A G T C C G A T G T C A A G T C C G T A G A T C A C T G C G T A
T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T