Information for 3-AATCCCCGGC (Motif 7)

G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C
Reverse Opposite:
A T C G A G T C G T A C T C A G A T C G A C T G A C T G T G C A A G C T A C G T
p-value:1e-9
log p-value:-2.291e+01
Information Content per bp:1.842
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.34%
Number of Background Sequences with motif191.4
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets50.2 +/- 25.8bp
Average Position of motif in Background50.7 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MZF1/MA0056.1/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AATCCCCGGC
--TCCCCA--
 G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C
A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----AATCCCCGGC-
AGGCTAATCCCCAANG
 A C G T A C G T A C G T A C G T A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------AATCCCCGGC-
ATAGTTAATCCCCCNNA
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AATCCCCGGC
CTTAATCCC----
 A C G T A C G T A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AATCCCCGGC
TAATCCCN---
 A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------AATCCCCGGC-
ATAGTTAATCCCCCTCA
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------AATCCCCGGC
GNNAGCTAATCCCCCN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------AATCCCCGGC-
NTTGTTAATCCCTCTNN
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AATCCCCGGC
NYTAATCCYB---
 A C G T A C G T A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATCCCCGGC
TTAATCCC----
 A C G T A C G T G T C A C T G A A C G T A G T C A G T C A T G C A G T C C A T G T C A G A T G C
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T