Information for 3-AAGTTATTTAAHT (Motif 8)

G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T
Reverse Opposite:
C G T A C G A T A G C T A G C T C G T A C G T A C T G A A G C T C G T A C G T A G T A C A C G T A C G T
p-value:1e-11
log p-value:-2.748e+01
Information Content per bp:1.848
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.2 +/- 30.2bp
Average Position of motif in Background53.2 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0093.1_Lhx3/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-AAGTTATTTAAHT---
GAAATTAATTAAATAAT
 A C G T G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T A C G T
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T

PH0095.1_Lhx5/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AAGTTATTTAAHT--
ANNATTTAATTAATTNN
 A C G T A C G T G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T
T C G A C A T G C A G T C G T A C G A T G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T C A G T G A T C A T C G

PH0128.1_Otp/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTATTTAAHT---
CNNATTAATTAATTNNN
 A C G T G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T A C G T
G T A C G T A C G T C A T C G A G A C T G A C T T C G A C T G A A G C T A C G T C T G A C T G A A G C T C G A T C T G A A G T C A C T G

PH0146.1_Pou3f1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AAGTTATTTAAHT----
NANTTAATTAATTANNN
 G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T G A C T

Lhx3/MA0135.1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AAGTTATTTAAHT-
-GATTAATTAATTT
 G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T
A C G T T C A G C T G A G C A T C G A T C T G A C G T A A C G T C G A T C G T A C G T A C G A T A C G T G C A T

PH0011.1_Alx1_2/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AAGTTATTTAAHT---
CGCATTAATTAATTGGC
 A C G T G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T A C G T
A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C

PH0136.1_Phox2b/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTATTTAAHT---
CNNNTTAATTAATTNNN
 A C G T G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T A C G T
A T G C T A G C G A C T T C G A G A C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A C G T C A G T T G A C A G T C A T C G

PH0101.1_Lmx1b/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTATTTAAHT---
NNAATTAATTAAAAANN
 A C G T G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T A C G T
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T

PH0149.1_Pou3f4/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AAGTTATTTAAHT----
GANTTAATTAATTAANN
 G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T A C G T A C G T
C T A G G C T A G T C A G A C T C G A T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A C G T A A C G T G A C T

PH0173.1_Uncx/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AAGTTATTTAAHT---
CNCNTTAATTAATTANN
 A C G T G T C A C G T A A C T G A C G T A C G T C T G A A G C T A C G T A C G T C T G A C T G A G C T A A C G T A C G T A C G T A C G T
T G A C A T C G A G T C T C A G A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A C G T A G C T C G T A A G C T A C T G