Information for 6-AGGCAAGACA (Motif 7)

C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A
Reverse Opposite:
G C A T A C T G A C G T G T A C A C G T G A C T T C A G A G T C G A T C G C A T
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.674
Number of Target Sequences with motif90.0
Percentage of Target Sequences with motif11.72%
Number of Background Sequences with motif2300.2
Percentage of Background Sequences with motif5.05%
Average Position of motif in Targets48.9 +/- 29.3bp
Average Position of motif in Background50.4 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAGACA
AAGGCAAGTGT
 A C G T C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Mecom/MA0029.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGGCAAGACA---
AAGATAAGATAACA
 A C G T C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A A C G T A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGCAAGACA-----
CAAATCCAGACATCACA
 A C G T A C G T C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGCAAGACA
CGTCTAGACA
 C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGGCAAGACA-
---CCAGACAG
 C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

GATA3/MA0037.2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGCAAGACA
AGATAAGA--
 C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A
C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AGGCAAGACA---
---CCAGACRSVB
 C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGGCAAGACA-----
AGGGAAGTCATTTCT
 C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGGCAAGACA-
----TTGACAG
 C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A A C G T
A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGGCAAGACA-----
AACACCAAAACAAAGGA
 A C G T A C G T C G T A C T A G T C A G A G T C C T G A T G C A C A T G T G C A T G A C C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A