Information for 9-ATTAGTTGTG (Motif 23)

C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
Reverse Opposite:
A G T C C G T A A G T C C G T A C G T A A G T C A G C T C G T A C G T A A C G T
p-value:1e-7
log p-value:-1.670e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 31.3bp
Average Position of motif in Background59.5 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0108.1_Msx3/Jaspar

Match Rank:1
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------ATTAGTTGTG
NNNTTAATTGGTTTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ATTAGTTGTG--
NNAATTAGTCACGGT
 A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PH0094.1_Lhx4/Jaspar

Match Rank:3
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------ATTAGTTGTG
TAAACTAATTAGCTTTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G

PH0005.1_Barhl1/Jaspar

Match Rank:4
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------ATTAGTTGTG
GNNTTAATTGGTTGTT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

PH0008.1_Barx2/Jaspar

Match Rank:5
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------ATTAGTTGTG
TAAGTAATTAGTTATA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
C G A T G C T A T C G A A C T G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A G C T A C G T C T G A G A C T C T G A

PH0028.1_En1/Jaspar

Match Rank:6
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------ATTAGTTGTG
GNATTAATTAGTTNNC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PH0092.1_Lhx2/Jaspar

Match Rank:7
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------ATTAGTTGTG
NNNNNCTAATTAGTTTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A A C G T

PH0089.1_Isx/Jaspar

Match Rank:8
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------ATTAGTTGTG
ACTCCTAATTAGTCGT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ATTAGTTGTG----
GTNTTGTTGTGANNT
 A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G A C G T A C G T A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------ATTAGTTGTG
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T G A A C T G A C G T A C G T C T A G C G A T A C T G
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G