Information for 6-GAGAGCAGCAGCC (Motif 11)

A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G G T A C A G C T A T G C A G C T A G T C
p-value:1e-10
log p-value:-2.448e+01
Information Content per bp:1.890
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif15.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.1 +/- 26.6bp
Average Position of motif in Background37.7 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGAGCAGCAGCC
ADGGYAGYAGCATCT
 A C G T A C G T A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGAGCAGCAGCC
---AGCAGCTGCT
 A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GAGAGCAGCAGCC--
---AGCAGCTGCTNN
 A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGCAGCAGCC---
NNNNAGCAGCTGCTGAN
 A C G T A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Spz1/MA0111.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGAGCAGCAGCC
-AGGGTAACAGC-
 A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGAGCAGCAGCC
---ANCAGCTG--
 A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAGAGCAGCAGCC
---CGCAGCTGCG
 A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GAGAGCAGCAGCC
--------CAGCC
 A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GAGAGCAGCAGCC
NGNGACAGCTGCN
 A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAGAGCAGCAGCC
--CAGCAGCTGN-
 A C T G C T G A A T C G C T G A A C T G G T A C G T C A A C T G G T A C C G T A A C T G A G T C A G T C
A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T