Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-166 | -3.844e+02 | 0.0000 | 137.0 | 17.21% | 207.5 | 0.44% | motif file (matrix) |
svg |
2 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-70 | -1.625e+02 | 0.0000 | 118.0 | 14.82% | 795.7 | 1.69% | motif file (matrix) |
svg |
3 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-49 | -1.137e+02 | 0.0000 | 89.0 | 11.18% | 664.5 | 1.41% | motif file (matrix) |
svg |
4 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-46 | -1.061e+02 | 0.0000 | 76.0 | 9.55% | 495.2 | 1.05% | motif file (matrix) |
svg |
5 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-41 | -9.567e+01 | 0.0000 | 70.0 | 8.79% | 471.3 | 1.00% | motif file (matrix) |
svg |
6 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-28 | -6.580e+01 | 0.0000 | 41.0 | 5.15% | 214.5 | 0.45% | motif file (matrix) |
svg |
7 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-23 | -5.307e+01 | 0.0000 | 53.0 | 6.66% | 544.8 | 1.15% | motif file (matrix) |
svg |
8 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-22 | -5.213e+01 | 0.0000 | 135.0 | 16.96% | 3130.5 | 6.63% | motif file (matrix) |
svg |
9 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-19 | -4.477e+01 | 0.0000 | 119.0 | 14.95% | 2792.8 | 5.92% | motif file (matrix) |
svg |
10 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-17 | -3.965e+01 | 0.0000 | 120.0 | 15.08% | 3027.9 | 6.42% | motif file (matrix) |
svg |
11 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-13 | -3.049e+01 | 0.0000 | 70.0 | 8.79% | 1499.2 | 3.18% | motif file (matrix) |
svg |
12 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-12 | -2.949e+01 | 0.0000 | 66.0 | 8.29% | 1391.7 | 2.95% | motif file (matrix) |
svg |
13 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-10 | -2.446e+01 | 0.0000 | 56.0 | 7.04% | 1203.7 | 2.55% | motif file (matrix) |
svg |
14 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-9 | -2.266e+01 | 0.0000 | 67.0 | 8.42% | 1672.8 | 3.54% | motif file (matrix) |
svg |
15 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-8 | -2.020e+01 | 0.0000 | 67.0 | 8.42% | 1778.5 | 3.77% | motif file (matrix) |
svg |
16 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-8 | -1.858e+01 | 0.0000 | 94.0 | 11.81% | 2998.1 | 6.35% | motif file (matrix) |
svg |
17 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-8 | -1.845e+01 | 0.0000 | 84.0 | 10.55% | 2571.1 | 5.45% | motif file (matrix) |
svg |
18 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-7 | -1.804e+01 | 0.0000 | 72.0 | 9.05% | 2087.1 | 4.42% | motif file (matrix) |
svg |
19 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-7 | -1.754e+01 | 0.0000 | 107.0 | 13.44% | 3653.2 | 7.74% | motif file (matrix) |
svg |
20 |
| Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer | 1e-7 | -1.704e+01 | 0.0000 | 15.0 | 1.88% | 143.9 | 0.30% | motif file (matrix) |
svg |
21 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-7 | -1.662e+01 | 0.0000 | 130.0 | 16.33% | 4804.4 | 10.18% | motif file (matrix) |
svg |
22 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.645e+01 | 0.0000 | 223.0 | 28.02% | 9517.5 | 20.17% | motif file (matrix) |
svg |
23 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-7 | -1.628e+01 | 0.0000 | 56.0 | 7.04% | 1523.1 | 3.23% | motif file (matrix) |
svg |
24 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-6 | -1.585e+01 | 0.0000 | 61.0 | 7.66% | 1747.5 | 3.70% | motif file (matrix) |
svg |
25 |
| OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer | 1e-6 | -1.580e+01 | 0.0000 | 10.0 | 1.26% | 61.2 | 0.13% | motif file (matrix) |
svg |
26 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.513e+01 | 0.0000 | 102.0 | 12.81% | 3604.2 | 7.64% | motif file (matrix) |
svg |
27 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-6 | -1.497e+01 | 0.0000 | 54.0 | 6.78% | 1506.5 | 3.19% | motif file (matrix) |
svg |
28 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-6 | -1.474e+01 | 0.0000 | 53.0 | 6.66% | 1477.7 | 3.13% | motif file (matrix) |
svg |
29 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-6 | -1.383e+01 | 0.0000 | 31.0 | 3.89% | 677.1 | 1.43% | motif file (matrix) |
svg |
30 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.350e+01 | 0.0000 | 132.0 | 16.58% | 5191.1 | 11.00% | motif file (matrix) |
svg |
31 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-5 | -1.307e+01 | 0.0000 | 47.0 | 5.90% | 1317.9 | 2.79% | motif file (matrix) |
svg |
32 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-5 | -1.306e+01 | 0.0000 | 22.0 | 2.76% | 399.3 | 0.85% | motif file (matrix) |
svg |
33 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-5 | -1.225e+01 | 0.0001 | 50.0 | 6.28% | 1484.9 | 3.15% | motif file (matrix) |
svg |
34 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-5 | -1.215e+01 | 0.0001 | 94.0 | 11.81% | 3474.9 | 7.36% | motif file (matrix) |
svg |
35 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-5 | -1.213e+01 | 0.0001 | 67.0 | 8.42% | 2229.1 | 4.72% | motif file (matrix) |
svg |
36 |
| OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer | 1e-4 | -1.083e+01 | 0.0002 | 37.0 | 4.65% | 1025.8 | 2.17% | motif file (matrix) |
svg |
37 |
| ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer | 1e-4 | -1.071e+01 | 0.0002 | 47.0 | 5.90% | 1446.1 | 3.06% | motif file (matrix) |
svg |
38 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-4 | -1.069e+01 | 0.0002 | 79.0 | 9.92% | 2892.6 | 6.13% | motif file (matrix) |
svg |
39 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-4 | -1.063e+01 | 0.0002 | 68.0 | 8.54% | 2385.7 | 5.05% | motif file (matrix) |
svg |
40 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-4 | -1.045e+01 | 0.0003 | 102.0 | 12.81% | 4023.7 | 8.53% | motif file (matrix) |
svg |
41 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-4 | -1.026e+01 | 0.0003 | 24.0 | 3.02% | 551.4 | 1.17% | motif file (matrix) |
svg |
42 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-4 | -1.018e+01 | 0.0003 | 147.0 | 18.47% | 6331.5 | 13.42% | motif file (matrix) |
svg |
43 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-4 | -1.010e+01 | 0.0003 | 62.0 | 7.79% | 2151.9 | 4.56% | motif file (matrix) |
svg |
44 |
| Sp1(Zf)/Promoter/Homer | 1e-4 | -9.547e+00 | 0.0006 | 39.0 | 4.90% | 1175.4 | 2.49% | motif file (matrix) |
svg |
45 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.518e+00 | 0.0006 | 50.0 | 6.28% | 1653.2 | 3.50% | motif file (matrix) |
svg |
46 |
| ETS(ETS)/Promoter/Homer | 1e-3 | -9.133e+00 | 0.0009 | 31.0 | 3.89% | 867.2 | 1.84% | motif file (matrix) |
svg |
47 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-3 | -9.102e+00 | 0.0009 | 26.0 | 3.27% | 671.1 | 1.42% | motif file (matrix) |
svg |
48 |
| ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-3 | -8.903e+00 | 0.0010 | 46.0 | 5.78% | 1518.6 | 3.22% | motif file (matrix) |
svg |
49 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-3 | -8.728e+00 | 0.0012 | 10.0 | 1.26% | 139.3 | 0.30% | motif file (matrix) |
svg |
50 |
| SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-3 | -8.611e+00 | 0.0013 | 61.0 | 7.66% | 2225.4 | 4.72% | motif file (matrix) |
svg |
51 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-3 | -8.043e+00 | 0.0023 | 42.0 | 5.28% | 1400.8 | 2.97% | motif file (matrix) |
svg |
52 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-3 | -7.638e+00 | 0.0034 | 73.0 | 9.17% | 2893.1 | 6.13% | motif file (matrix) |
svg |
53 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-3 | -7.548e+00 | 0.0036 | 35.0 | 4.40% | 1125.9 | 2.39% | motif file (matrix) |
svg |
54 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.763e+00 | 0.0078 | 45.0 | 5.65% | 1635.5 | 3.47% | motif file (matrix) |
svg |
55 |
| Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-2 | -6.741e+00 | 0.0078 | 18.0 | 2.26% | 464.1 | 0.98% | motif file (matrix) |
svg |
56 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.599e+00 | 0.0089 | 21.0 | 2.64% | 589.8 | 1.25% | motif file (matrix) |
svg |
57 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-2 | -6.432e+00 | 0.0103 | 4.0 | 0.50% | 29.8 | 0.06% | motif file (matrix) |
svg |
58 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -6.173e+00 | 0.0131 | 32.0 | 4.02% | 1086.3 | 2.30% | motif file (matrix) |
svg |
59 |
| Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -6.095e+00 | 0.0139 | 19.0 | 2.39% | 533.8 | 1.13% | motif file (matrix) |
svg |
60 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-2 | -6.058e+00 | 0.0142 | 12.0 | 1.51% | 267.3 | 0.57% | motif file (matrix) |
svg |
61 |
| JunD(bZIP)/K562-JunD-ChIP-Seq/Homer | 1e-2 | -6.035e+00 | 0.0143 | 8.0 | 1.01% | 135.4 | 0.29% | motif file (matrix) |
svg |
62 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.803e+00 | 0.0177 | 36.0 | 4.52% | 1297.0 | 2.75% | motif file (matrix) |
svg |
63 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.710e+00 | 0.0191 | 23.0 | 2.89% | 721.1 | 1.53% | motif file (matrix) |
svg |
64 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.672e+00 | 0.0196 | 43.0 | 5.40% | 1638.9 | 3.47% | motif file (matrix) |
svg |
65 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.551e+00 | 0.0218 | 96.0 | 12.06% | 4330.0 | 9.17% | motif file (matrix) |
svg |
66 |
| CRE(bZIP)/Promoter/Homer | 1e-2 | -5.528e+00 | 0.0219 | 17.0 | 2.14% | 480.9 | 1.02% | motif file (matrix) |
svg |
67 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-2 | -5.483e+00 | 0.0226 | 48.0 | 6.03% | 1898.3 | 4.02% | motif file (matrix) |
svg |
68 |
| NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-2 | -5.398e+00 | 0.0242 | 32.0 | 4.02% | 1145.6 | 2.43% | motif file (matrix) |
svg |
69 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.359e+00 | 0.0248 | 34.0 | 4.27% | 1241.7 | 2.63% | motif file (matrix) |
svg |
70 |
| Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-2 | -5.248e+00 | 0.0273 | 31.0 | 3.89% | 1111.3 | 2.35% | motif file (matrix) |
svg |
71 |
| Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.233e+00 | 0.0274 | 74.0 | 9.30% | 3234.7 | 6.85% | motif file (matrix) |
svg |
72 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-2 | -5.184e+00 | 0.0283 | 82.0 | 10.30% | 3655.8 | 7.75% | motif file (matrix) |
svg |
73 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-2 | -5.113e+00 | 0.0300 | 13.0 | 1.63% | 341.0 | 0.72% | motif file (matrix) |
svg |
74 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-2 | -5.055e+00 | 0.0314 | 16.0 | 2.01% | 463.9 | 0.98% | motif file (matrix) |
svg |
75 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-2 | -5.049e+00 | 0.0314 | 7.0 | 0.88% | 127.4 | 0.27% | motif file (matrix) |
svg |
76 |
| Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.046e+00 | 0.0314 | 28.0 | 3.52% | 990.0 | 2.10% | motif file (matrix) |
svg |
77 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.863e+00 | 0.0365 | 37.0 | 4.65% | 1428.7 | 3.03% | motif file (matrix) |
svg |
78 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-2 | -4.776e+00 | 0.0393 | 29.0 | 3.64% | 1057.4 | 2.24% | motif file (matrix) |
svg |
79 |
| Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer | 1e-2 | -4.710e+00 | 0.0415 | 5.0 | 0.63% | 75.0 | 0.16% | motif file (matrix) |
svg |
80 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.670e+00 | 0.0427 | 31.0 | 3.89% | 1160.9 | 2.46% | motif file (matrix) |
svg |