Information for 12-TCGCTGTCTCTCT (Motif 10)

A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G G T C A C T A G C G T A A C T G C G T A A G T C C T G A A T C G A T G C C T A G C T G A
p-value:1e-10
log p-value:-2.401e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.2 +/- 28.0bp
Average Position of motif in Background28.4 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCGCTGTCTCTCT-
--NCTGTCAATCAN
 A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TCGCTGTCTCTCT---
---CTGTCTGTCACCT
 A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TCGCTGTCTCTCT---
----TGTCTGDCACCT
 A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCGCTGTCTCTCT
GTCWGCTGTYYCTCT
 A C G T A C G T A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T
C T A G A C G T A G T C C G T A A C T G A G T C G C A T A C T G G C A T A G T C G A C T G A T C G C A T A G T C A G C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TCGCTGTCTCTCT-
--SCTGTCAVTCAV
 A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCGCTGTCTCTCT
-GSCTGTCACTCA
 A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCGCTGTCTCTCT-
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TCGCTGTCTCTCT
---CTGTCTGG--
 A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCGCTGTCTCTCT
-VBSYGTCTGG--
 A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCGCTGTCTCTCT--
TCACTTTCACTTTCN
 A G C T A G T C A T C G A T G C A G C T A C T G A C G T A G T C A C G T A G T C A C G T A G T C A C G T A C G T A C G T
G A C T G A T C T G C A A G T C G C A T G A C T A C G T A G T C G T C A G A T C A G C T A G C T G A C T G A T C G C A T