Information for 5-GGGTGTCTGT (Motif 9)

A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C T G C G T A A G T C C G T A G T A C A G T C A G T C
p-value:1e-9
log p-value:-2.180e+01
Information Content per bp:1.942
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif21.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets73.6 +/- 20.2bp
Average Position of motif in Background52.4 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGGTGTCTGT
VBSYGTCTGG
 A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGGTGTCTGT----
GGNGCGNCTGTTNNN
 A C G T A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGGTGTCTGT
--TWGTCTGV
 A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGGTGTCTGT
--CTGTCTGG
 A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGGTGTCTGT--
GGGGGTGTGTCC
 A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T
T C A G C A T G C A T G A C T G A C T G A G C T A C T G A C G T A C T G C A G T A T G C A G T C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGGTGTCTGT-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0025.1_Glis2_1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGGTGTCTGT-
NTNTGGGGGGTCNNNA
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGGTGTCTGT-----
---TGTCTGDCACCT
 A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GGGTGTCTGT---
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GGGTGTCTGT-
-----GCTGTG
 A C T G A C T G A C T G C G A T A C T G A C G T A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G