Information for 3-CAAGGCATCTTCA (Motif 5)

A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G G T C A C G T A A C T G G T C A A C G T A C T G A G T C A G T C A C G T C G A T C T A G
p-value:1e-11
log p-value:-2.692e+01
Information Content per bp:1.929
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.1 +/- 22.8bp
Average Position of motif in Background27.7 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROX1/MA0794.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAAGGCATCTTCA
TAAGGCGTCTTG-
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A
A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAGGCATCTTCA
-AAGGCAAGTGT-
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGCATCTTCA-
CTCATGAATATTCAT
 A C G T A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CAAGGCATCTTCA
-------GCTTCC
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAAGGCATCTTCA-
----GHATATKCAT
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CAAGGCATCTTCA
CNAGGCCT-----
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T

POL005.1_DPE/Jaspar

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CAAGGCATCTTCA
---NACATCTTN-
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A
A C G T A C G T A C G T C T G A C T G A A T G C C T G A C G A T T A G C G A C T C A G T A G T C A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CAAGGCATCTTCA-
----GAATATTCAT
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CAAGGCATCTTCA
GCNGCCATCTTG-
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CAAGGCATCTTCA
CTAGGCCT-----
 A G T C C G T A C G T A A C T G A C T G A G T C C G T A A C G T A G T C A C G T A C G T A G T C C G T A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T