Information for 4-CCWGCWGKGGCATATG (Motif 4)

A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
Reverse Opposite:
A T G C C T G A G C A T C G T A C G A T C A T G A T G C A G T C G T A C A G T C C G T A A C T G G T A C C G T A A C T G A C T G
p-value:1e-13
log p-value:-3.063e+01
Information Content per bp:1.802
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.0 +/- 18.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CCWGCWGKGGCATATG
CCCCCTGCTGTG-------
 A C G T A C G T A C G T A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCWGCWGKGGCATATG
GGCCYCCTGCTGDGH------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCWGCWGKGGCATATG
NNTCCTGCTGTGNNN----
 A C G T A C G T A C G T A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCWGCWGKGGCATATG
TCNCCTGCTGNGNNN----
 A C G T A C G T A C G T A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCWGCWGKGGCATATG
TNTCCTGCTGTGNNG----
 A C G T A C G T A C G T A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCWGCWGKGGCATATG
CCTGCTGAGH------
 A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCWGCWGKGGCATATG
CCAGCTGTTN------
 A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CCWGCWGKGGCATATG
NVCAGCTGBBNN-----
 A C G T A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCWGCWGKGGCATATG
ANCAGCTG---------
 A C G T A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:10
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CCWGCWGKGGCATATG--
--------GACATATGTT
 A G T C A G T C C G A T A C T G A G T C G C A T A C T G A C T G A C T G A T C G G T A C C G T A A C G T C G T A A G C T T A C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T