Information for 3-TAATTAAMCT (Motif 2)

A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
Reverse Opposite:
C G T A T A C G A C G T G A C T A G C T T G C A C T G A C G A T C G A T C T G A
p-value:1e-13
log p-value:-3.194e+01
Information Content per bp:1.648
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif5.91%
Number of Background Sequences with motif801.7
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets50.5 +/- 24.8bp
Average Position of motif in Background48.7 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LMX1A/MA0702.1/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-TAATTAAMCT
TTAATTAA---
 A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
A G C T G A C T C T G A G C T A G C A T C G A T C T G A T C G A A C G T A C G T A C G T

Lhx4/MA0704.1/Jaspar

Match Rank:2
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAAMCT
TTAATTAA---
 A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
A G C T G A C T T C G A C G T A C G A T A C G T C T G A T C G A A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:3
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAAMCT
NTAATTAG---
 A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T

VAX1/MA0722.1/Jaspar

Match Rank:4
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAAMCT
NTAATTAG---
 A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
C T A G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A C G T A C G T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:5
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAAMCT
NNTAATTAGN--
 A C G T A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T A C G T

VAX2/MA0723.1/Jaspar

Match Rank:6
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAAMCT
NTAATTAG---
 A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T A C G T A C G T

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:7
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAAMCT
YTAATTARNN-
 A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
A G T C G A C T T G C A G T C A A C G T A C G T C T G A T C A G G T A C G C A T A C G T

UNCX/MA0721.1/Jaspar

Match Rank:8
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TAATTAAMCT
NTAATTAN---
 A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
A G C T C G A T C T G A C T G A C A G T G A C T C T G A T C A G A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TAATTAAMCT
TAATTAGN--
 A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T

mix-a/MA0621.1/Jaspar

Match Rank:10
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TAATTAAMCT
NCTAATTAANN-
 A C G T A C G T A G C T C G T A G C T A A G C T A C G T C T G A C T G A T G C A A T G C G C A T
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T A C G T