Information for 5-AGCCTCTTAATGGCTC (Motif 9)

C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
Reverse Opposite:
A C T G T G C A C T A G A G T C G T A C G C T A A C G T A C G T C G T A C G T A C T A G C G T A A C T G C T A G A G T C G C A T
p-value:1e-13
log p-value:-3.207e+01
Information Content per bp:1.814
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.0 +/- 19.6bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC
-GNCTATAAAAGG---
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC
----TTTTTATTGC--
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC--
--TTTATTAATTGCNNGN
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C A C G T A C G T
A C G T A C G T G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

NKX6-1/MA0674.1/Jaspar

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC
------TTAATTAN--
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AGCCTCTTAATGGCTC
-----GKTAATGR---
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC
-----GTTAATGGCC-
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:7
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC
------TTAATTAN--
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC
-----TTTAATTGCN-
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T

GSX2/MA0893.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC
-----NTTAATTAGN-
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T C A G T A G C T C G A T C G T A C G T A G C A T C A G T C T G A T A C G C A G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGCCTCTTAATGGCTC--
-ANNCATTAATTGCTNGN
 C G T A A C T G A G T C A G T C A C G T G A T C A C G T C G A T C G T A C G T A C G A T C A T G C T A G A G T C A C G T A G T C A C G T A C G T
A C G T T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T