Information for 6-GTCTGGKRMYTAA (Motif 8)

A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
Reverse Opposite:
A C G T C G A T C G T A C T G A A C G T A G C T G T C A A T G C A G T C C G T A A C T G C G T A A G T C
p-value:1e-13
log p-value:-3.207e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.7 +/- 25.0bp
Average Position of motif in Background30.7 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GTCTGGKRMYTAA
CTGTCTGG-------
 A C G T A C G T A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GTCTGGKRMYTAA
VBSYGTCTGG-------
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------GTCTGGKRMYTAA
NNTNNTGTCTGGNNTNG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTCTGGKRMYTAA
GGTCTGGCAT----
 A C G T A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCTGGKRMYTAA
TWGTCTGV-------
 A C G T A C G T A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGGKRMYTAA
TGTCTGDCACCT--
 A C G T A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCTGGKRMYTAA
CTGTCTGTCACCT--
 A C G T A C G T A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTCTGGKRMYTAA----
-ACCGGCAATTAATAAA
 A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTCTGGKRMYTAA
WDNCTGGGCA----
 A C G T A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTCTGGKRMYTAA----
TTAAGGGGATTAACTAC
 A C T G A C G T A G T C C G A T A C T G A T C G A C G T C T G A G T C A A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C