Information for 6-RCAATTAGCC (Motif 5)

T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
Reverse Opposite:
C T A G A T C G T A G C C G A T T G C A G T C A G A C T A G C T T A C G A G T C
p-value:1e-16
log p-value:-3.780e+01
Information Content per bp:1.653
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif7.84%
Number of Background Sequences with motif949.8
Percentage of Background Sequences with motif1.98%
Average Position of motif in Targets49.8 +/- 26.0bp
Average Position of motif in Background48.0 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EN2/MA0642.1/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-RCAATTAGCC
CCCAATTAGC-
 A C G T T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T

GBX2/MA0890.1/Jaspar

Match Rank:2
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-RCAATTAGCC
ACCAATTAGC-
 A C G T T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T

Msx3/MA0709.1/Jaspar

Match Rank:3
Score:0.80
Offset:0
Orientation:forward strand
Alignment:RCAATTAGCC
CCAATTAA--
 T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.80
Offset:0
Orientation:forward strand
Alignment:RCAATTAGCC
GCAATTAG--
 T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:5
Score:0.80
Offset:0
Orientation:forward strand
Alignment:RCAATTAGCC
CCAATTAG--
 T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:RCAATTAGCC
CCAATTAA--
 T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:RCAATTAGCC
BCMATTAG--
 T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

GBX1/MA0889.1/Jaspar

Match Rank:8
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-RCAATTAGCC
ACTAATTAGC-
 A C G T T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-RCAATTAGCC
NNCAATTANN-
 A C G T T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

Dlx2/MA0885.1/Jaspar

Match Rank:10
Score:0.78
Offset:0
Orientation:forward strand
Alignment:RCAATTAGCC
GCAATTAA--
 T C A G A T G C T C G A C T G A C A G T A C G T C G T A A T C G T A G C G A T C
T A C G G A T C G T C A G T C A A C G T A C G T C G T A G C T A A C G T A C G T