Information for 13-CTGAAGAGGCTTC (Motif 28)

A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C
Reverse Opposite:
C T A G C G T A C T G A A C T G A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A T C G
p-value:1e-8
log p-value:-2.056e+01
Information Content per bp:1.930
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 39.3bp
Average Position of motif in Background69.1 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0113.1_Nkx2-4/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAGAGGCTTC
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGAAGAGGCTTC---
-AGAAATGACTTCCCT
 A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C A C G T A C G T A C G T
A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAGAGGCTTC
AANTTCAAGTGGCTTN
 A C G T A C G T A C G T A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGAAGAGGCTTC
BTBRAGTGSN---
 A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGAAGAGGCTTC
CTYRAGTGSY---
 A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAGAGGCTTC
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PH0114.1_Nkx2-5/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAGAGGCTTC
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.57
Offset:8
Orientation:forward strand
Alignment:CTGAAGAGGCTTC-
--------GCTTCC
 A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTGAAGAGGCTTC-
---AAGAGGATTAG
 A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C A C G T
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGAAGAGGCTTC
-TTGAGTGSTT--
 A T G C A C G T A C T G C G T A C G T A C T A G C G T A A C T G A C T G A G T C A G C T A C G T A G T C
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T