Information for 3-CCTGCTGKGM (Motif 2)

G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A
Reverse Opposite:
C A G T T G A C G T A C A G T C G C T A C T A G A G T C G C T A C A T G C A T G
p-value:1e-25
log p-value:-5.788e+01
Information Content per bp:1.690
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif19.30%
Number of Background Sequences with motif3395.4
Percentage of Background Sequences with motif7.08%
Average Position of motif in Targets50.6 +/- 26.8bp
Average Position of motif in Background49.9 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.95
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGKGM
CCCCCTGCTGTG-
 A C G T A C G T A C G T G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.95
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGKGM--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGKGM--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.93
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCTGKGM--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCTGCTGKGM
CCTGCTGAGH
 G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.92
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGKGM
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGKGM
GACCCCCCGCTGTG-
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGKGM
GACCCCCCGCTGCGC
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CCTGCTGKGM
---GCTGTG-
 G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCTGKGM
GACCCCCCGCTGTGC
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C C G A T T C A G A G T C C G A T T C A G C A T G A C T G G T C A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C