Information for 6-GCTGCATCTGGTTAAG (Motif 4)

C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
Reverse Opposite:
A G T C C G A T A C G T C G T A C G T A A G T C A G T C C G T A A C T G C G T A A C G T A T C G A G T C C G T A A C T G A G T C
p-value:1e-13
log p-value:-3.125e+01
Information Content per bp:1.912
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.7 +/- 25.9bp
Average Position of motif in Background37.4 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCTGCATCTGGTTAAG---
--GAAAACTAGTTAACATC
 C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G A C G T A C G T A C G T
A C G T A C G T T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GCTGCATCTGGTTAAG
------ACTAGTTAAC
 C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

SPDEF/MA0686.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCTGCATCTGGTTAAG
--TACATCCGGGT---
 C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
A C G T A C G T G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCTGCATCTGGTTAAG----
---ANNNCTAGTTAACNGNN
 C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCTGCATCTGGTTAAG
NNNNAGCAGCTGCTGAN-
 A C G T A C G T C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

SOX8/MA0868.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GCTGCATCTGGTTAAG
AACACTGCACATTGTT---
 A C G T A C G T A C G T C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCTGCATCTGGTTAAG
--NVCAGCTGBBNN--
 C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCTGCATCTGGTTAAG
--ACCATCTGTT----
 C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
A C G T A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCTGCATCTGGTTAAG
NNTNCGCACCTGTNGAN-
 A C G T A C G T C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCTGCATCTGGTTAAG
----GGTCTGGCAT--
 C T A G A G T C A C G T A C T G A T G C C G T A C G A T A G T C A C G T A C T G A C T G A C G T A C G T C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T