Information for 6-TKCMCASAMWYACWTA (Motif 4)

A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A C G A T A C T G A C G T C T G A C G T A C A G T A C G T A T C G A C G T A C T G A C T G A C T G G T A C C G T A
p-value:1e-9
log p-value:-2.245e+01
Information Content per bp:1.827
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.25%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 24.1bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TKCMCASAMWYACWTA
HTTTCCCASG--------
 A C G T A C G T A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A
G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TKCMCASAMWYACWTA
TGCCCAGNHW------
 A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TKCMCASAMWYACWTA
AGCGGCACACACGCAA---
 A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TKCMCASAMWYACWTA
ATTTCCAAGAA-------
 A C G T A C G T A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TKCMCASAMWYACWTA-----
----CATAACCACTTAACAAC
 A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------TKCMCASAMWYACWTA
TACATGTGCACATAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

PH0088.1_Isl2/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TKCMCASAMWYACWTA----
----CAAAATCAATTAATTT
 A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.53
Offset:7
Orientation:forward strand
Alignment:TKCMCASAMWYACWTA-
-------AAGCACTTAA
 A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------TKCMCASAMWYACWTA
CAGATGTGCACATACGT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.51
Offset:8
Orientation:forward strand
Alignment:TKCMCASAMWYACWTA-
--------ACCACTTAA
 A C G T A C G T G T A C G T A C A G T C C G T A A T G C C G T A G T A C C G A T A G C T C G T A A G T C C G T A A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A