Information for 5-ACGGCAGRGGGMGCTS (Motif 3)

G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A A C T G A G T C C A G T A G T C A G T C G T A C A G C T A G T C A C G T A C T G A G T C A G T C A C T G A C G T
p-value:1e-17
log p-value:-3.968e+01
Information Content per bp:1.899
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.7 +/- 17.6bp
Average Position of motif in Background68.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ACGGCAGRGGGMGCTS---
GCCASCAGGGGGCGCYVNNG
 A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACGGCAGRGGGMGCTS
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ACGGCAGRGGGMGCTS
CACAGCAGGGGG-----
 A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ACGGCAGRGGGMGCTS
CACAGCGGGGGGTC---
 A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ACGGCAGRGGGMGCTS-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACGGCAGRGGGMGCTS
NCGCAGCGGGGGGTC---
 A C G T A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACGGCAGRGGGMGCTS
NCNCAGCGGGGGGTC---
 A C G T A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACGGCAGRGGGMGCTS
-TGTCAGGGGGCG---
 G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
A C G T C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--ACGGCAGRGGGMGCTS
DCHCAGCAGGRGGCC---
 A C G T A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACGGCAGRGGGMGCTS
CACGGCAGTTGGTNN--
 A C G T G T C A A G T C C T A G A C T G A G T C C G T A A C T G C T G A A C T G A C T G A C T G G T A C A C T G A G T C A C G T A T C G
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G A C G T A C G T