Information for 3-CTGCCCTCTGGTGBCC (Motif 2)

A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C
Reverse Opposite:
C T A G C T A G T A G C G T A C C G T A A T G C G T A C C G T A C T A G C T G A A C T G A C T G A C T G G T A C T C G A C T A G
p-value:1e-20
log p-value:-4.716e+01
Information Content per bp:1.735
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.93%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.0 +/- 23.1bp
Average Position of motif in Background62.9 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---CTGCCCTCTGGTGBCC-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCCTCTGGTGBCC-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CTGCCCTCTGGTGBCC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGCCCTCTGGTGBCC
-TGWCCTCARNTGACC
 A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C
A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGCCCTCTGGTGBCC--
-TGACCTTTCGTGACCTT
 A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C A C G T A C G T
A C G T A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCCTCTGGTGBCC
GCNGCCATCTTG-----
 A C G T A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGCCCTCTGGTGBCC----
-TGACCTAAAGTAACCTCTG
 A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C A C G T A C G T A C G T A C G T
A C G T A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCCTCTGGTGBCC
GCCGCCATCTTG-----
 A C G T A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGCCCTCTGGTGBCC-
-TGACCTNTAGTAACCC
 A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C A C G T
A C G T G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGCCCTCTGGTGBCC
CTGCCCGCA-------
 A G T C A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C A T G A T C G A C G T C A T G A T C G G A T C A G T C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T