Information for 2-GCGCCMCCGSGCG (Motif 3)

C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G
Reverse Opposite:
G T A C C T A G A T G C T A C G T G A C A C T G A T C G A C T G A T C G A T C G G T A C A C T G A G T C
p-value:1e-14
log p-value:-3.351e+01
Information Content per bp:1.754
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif3.85%
Number of Background Sequences with motif339.7
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets44.6 +/- 22.4bp
Average Position of motif in Background50.4 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCMCCGSGCG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCMCCGSGCG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCGCCMCCGSGCG
GGTCCCGCCCCCTTCTC
 A C G T A C G T A C G T A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

PB0010.1_Egr1_1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCGCCMCCGSGCG
TCCGCCCCCGCATT
 A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G
G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCGCCMCCGSGCG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GCGCCMCCGSGCG
NNNGGGGCGCCCCCNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCGCCMCCGSGCG
AGCGCGCC--------
 A C G T A C G T A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCMCCGSGCG
TGCGCAGGCGC---
 A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCGCCMCCGSGCG
CCCCCGCCCCCGCC--
 A C G T A C G T A C G T C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCGCCMCCGSGCG
-TGCCCCCGGGCA
 C T A G A G T C A C T G A T G C A T G C T G A C T A G C A G T C A C T G A T G C A T C G A G T C A C T G
A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A