Information for 6-AACCGTGGCA (Motif 9)

C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A
Reverse Opposite:
A C G T A C T G G A T C A G T C C G T A A G T C T C A G A C T G A G C T A C G T
p-value:1e-11
log p-value:-2.630e+01
Information Content per bp:1.847
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif41.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets48.1 +/- 20.5bp
Average Position of motif in Background45.1 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AACCGTGGCA-
---CTTGGCAA
 C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AACCGTGGCA---
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0045.1_Myb_1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AACCGTGGCA--
ATGGAAACCGTTATTTT
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T A C G T
G C T A C G A T C A T G C A T G G T C A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C A T G C A T G A C T C G A T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AACCGTGGCA--
---NTTGGCANN
 C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0046.1_Mybl1_1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AACCGTGGCA--
TTGAAAACCGTTAATTT
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T A C G T
G A C T C G A T C A T G C G T A G C T A C T G A C T G A G T A C A T G C A C T G A C G T G A C T C T G A G C T A G C A T G A C T C G A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AACCGTGGCA---
-----TGTCANYT
 C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AACCGTGGCA--
--NNTTGGCANN
 C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AACCGTGGCA---
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AACCGTGGCA
--NCGTGACN
 C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AACCGTGGCA-
--GGTTGGCAT
 C G T A C T G A G T A C A G T C C T A G C G A T A C T G C A T G A G T C G T C A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T