Information for 1-CCCACCAGGG (Motif 3)

T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G
Reverse Opposite:
G A T C G T A C A G T C A G C T C A T G T A C G G C A T A C T G C T A G A T C G
p-value:1e-12
log p-value:-2.961e+01
Information Content per bp:1.703
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif7.92%
Number of Background Sequences with motif1405.9
Percentage of Background Sequences with motif2.91%
Average Position of motif in Targets52.8 +/- 26.8bp
Average Position of motif in Background48.6 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:CCCACCAGGG--
CACAGCAGGGGG
 T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CCCACCAGGG----
DCHCAGCAGGRGGCC
 A C G T T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCCACCAGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCCACCAGGG----------
GCCASCAGGGGGCGCYVNNG
 T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CCCACCAGGG--
CCACACAGCAGGAGA
 A C G T A C G T A C G T T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCCACCAGGG-------
TGGCCACCAGGGGGCGCTA
 A C G T A C G T T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCACCAGGG
DCTCAGCAGG-
 A C G T T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCACCAGGG--------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCCACCAGGG--
GAGCACAGCAGGACA
 A C G T A C G T A C G T T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCCACCAGGG----
CACAGCGGGGGGTC
 T A G C G A T C A G T C C G T A A T G C G T A C C T G A A C T G C A T G C T A G A C G T A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C