Information for 1-CCCGGAGTTTAHTCCC (Motif 2)

A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C
Reverse Opposite:
C T A G A T C G A T C G C G T A C T A G A C G T C T G A C G T A C G T A A T G C C A G T A T G C G T A C C T A G A T C G A C T G
p-value:1e-13
log p-value:-3.062e+01
Information Content per bp:1.789
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.4 +/- 19.2bp
Average Position of motif in Background41.1 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCCGGAGTTTAHTCCC----
---GANNATTAATCCCTNNN
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCCGGAGTTTAHTCCC----
---NANANTTAATCCCNNNN
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCCGGAGTTTAHTCCC---
---NAATTTTATTACCNNN
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CCCGGAGTTTAHTCCC
-------TTTAAT---
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCCGGAGTTTAHTCCC----
---GNNNATTAATCCCTNCN
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CCCGGAGTTTAHTCCC
--------TTAATCCC
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CCCGGAGTTTAHTCCC-----
----NTTGTTAATCCCTCTNN
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.54
Offset:8
Orientation:forward strand
Alignment:CCCGGAGTTTAHTCCC
--------TTAATCCT
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CCCGGAGTTTAHTCCC-----
-----AGGCTAATCCCCAANG
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCCGGAGTTTAHTCCC-----
----NTAGTTAATCCCCTTAN
 A G T C A T G C A G T C A C T G A T C G G T C A A T C G A C G T A C G T A G C T G T C A G A T C A C G T A T G C A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A