Information for 5-TTACTCCCCTCTGCCT (Motif 19)

A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A G T C C G T A A C T G C G T A A C T G A C T G A C T G A C T G C G T A A C T G A C G T C G T A C G T A
p-value:1e-1
log p-value:-4.011e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets8.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0129.1_Otx1/Jaspar

Match Rank:1
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TTACTCCCCTCTGCCT
NNNAATTAATCCCCNCN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T A C G T A C G T A C G T A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTACTCCCCTCTGCCT
NANANTTAATCCCNNNN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A A C G T A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTACTCCCCTCTGCCT
NTAGTTAATCCCCTTAN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A A C G T A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTACTCCCCTCTGCCT
GANNATTAATCCCTNNN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTACTCCCCTCTGCCT
GNNNATTAATCCCTNCN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TTACTCCCCTCTGCCT--
----TGACCTTTGCCCTA
 A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TTACTCCCCTCTGCCT---
----TGACCTTTGCCCTAN
 A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TTACTCCCCTCTGCCT
-GACCCCCCGCTGCGC
 A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

PH0137.1_Pitx1/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TTACTCCCCTCTGCCT
NTTGTTAATCCCTCTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A A C G T A C G T A C G T

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TTACTCCCCTCTGCCT
ATAGTTAATCCCCCNNA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T A G T C A G T C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A A C G T A C G T A C G T