Information for 6-CCCAGCCAGT (Motif 16)

A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T
Reverse Opposite:
T G C A A G T C C G A T A C T G A C T G A G T C A G C T A C T G A T C G A C T G
p-value:1e-8
log p-value:-1.851e+01
Information Content per bp:1.842
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif418.7
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets53.0 +/- 26.3bp
Average Position of motif in Background49.3 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0167.1_Sox13_2/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CCCAGCCAGT--
ANNTNCCCACCCANNAC
 A C G T A C G T A C G T A C G T A C G T A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T A C G T A C G T
G T C A C G T A C G A T C G A T C G T A G T A C G T A C T A G C C G T A G A T C G T A C G T A C C T G A C T G A G A C T G C T A G A T C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCCAGT
TGCCCAGNHW--
 A C G T A C G T A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCCAGCCAGT--
ACTAGCCAATCA
 A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCCAGT---
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGT
-CCAGACAG-
 A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCAGCCAGT
-BCAGACWA-
 A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCCAGCCAGT
--CAGCC---
 A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCCAGT--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCCAGCCAGT
---TGCCAA-
 A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCCAGT---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A G T C T A G C G T A C C T G A C T A G A G T C T G A C C G T A T C A G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A