Information for 4-TGCTAATGGA (Motif 12)

G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A
Reverse Opposite:
A C G T G T A C A G T C C G T A A C G T A C G T C G T A C T A G A G T C C T G A
p-value:1e-8
log p-value:-1.996e+01
Information Content per bp:1.843
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif26.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets62.7 +/- 20.6bp
Average Position of motif in Background58.0 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TGCTAATGGA
--CTAATKGV
 G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A
A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TGCTAATGGA
-GKTAATGR-
 G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATGGA
WATGCAAATGAG
 A C G T A C G T G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATGGA---
CNNNGCTACTGTANNN
 A C G T A C G T A C G T G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TGCTAATGGA-
-GTTAATGGCC
 G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATGGA---
TNNTGCTACTGTNNNN
 A C G T A C G T A C G T G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A A C G T A C G T A C G T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGCTAATGGA
--NTAATTGN
 G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

VENTX/MA0724.1/Jaspar

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TGCTAATGGA-
--CTAATCGNT
 G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A A C G T
A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGCTAATGGA----
CCTTAATNGNTTTT
 G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A A C G T A C G T A C G T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATGGA
TATGCWAATBAV
 A C G T A C G T G A C T A C T G A G T C A C G T T G C A T G C A A C G T A C T G A C T G T C G A
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G