p-value: | 1e-7 |
log p-value: | -1.626e+01 |
Information Content per bp: | 1.903 |
Number of Target Sequences with motif | 4.0 |
Percentage of Target Sequences with motif | 0.44% |
Number of Background Sequences with motif | 2.2 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 42.9 +/- 25.9bp |
Average Position of motif in Background | 49.1 +/- 18.1bp |
Strand Bias (log2 ratio + to - strand density) | 1.3 |
Multiplicity (# of sites on avg that occur together) | 1.75 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Sox3/MA0514.1/Jaspar
Match Rank: | 1 |
Score: | 0.68 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | ATCCCTCCCTTTGTTT- -------CCTTTGTTTT |
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Sox2/MA0143.3/Jaspar
Match Rank: | 2 |
Score: | 0.66 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | ATCCCTCCCTTTGTTT -------CCTTTGTT- |
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Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer
Match Rank: | 3 |
Score: | 0.62 |
Offset: | 6 |
Orientation: | forward strand |
Alignment: | ATCCCTCCCTTTGTTT ------NCCATTGTTC |
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Sox6/MA0515.1/Jaspar
Match Rank: | 4 |
Score: | 0.62 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | ATCCCTCCCTTTGTTT- -------CCATTGTTTT |
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Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer
Match Rank: | 5 |
Score: | 0.62 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | ATCCCTCCCTTTGTTT -------CCWTTGTY- |
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Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer
Match Rank: | 6 |
Score: | 0.61 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | ATCCCTCCCTTTGTTT- -------YCTTTGTTCC |
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Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer
Match Rank: | 7 |
Score: | 0.60 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | ATCCCTCCCTTTGTTT- -------CCWTTGTYYB |
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PB0061.1_Sox11_1/Jaspar
Match Rank: | 8 |
Score: | 0.60 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | ATCCCTCCCTTTGTTT---- ---NNNTCCTTTGTTCTNNN |
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PB0071.1_Sox4_1/Jaspar
Match Rank: | 9 |
Score: | 0.60 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | ATCCCTCCCTTTGTTT---- ---TNNTCCTTTGTTCTNNT |
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Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer
Match Rank: | 10 |
Score: | 0.60 |
Offset: | 6 |
Orientation: | reverse strand |
Alignment: | ATCCCTCCCTTTGTTT ------NCCATTGTTY |
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