Information for 2-GCATCACAAAASC (Motif 3)

A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C
Reverse Opposite:
A C T G A T C G A G C T A C G T A G C T A C G T A C T G A C G T A C T G G T C A A C G T A C T G A T G C
p-value:1e-16
log p-value:-3.713e+01
Information Content per bp:1.840
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 17.1bp
Average Position of motif in Background58.8 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GCATCACAAAASC
ATTTGCATAACAAAG--
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCATCACAAAASC--
AGCGGCACACACGCAA
 A C G T A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCATCACAAAASC
ATTTGCATAACAATG--
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCATCACAAAASC
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCATCACAAAASC
NWAACCACADNN--
 A C G T A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCATCACAAAASC
ATATCAAAACAAAACA
 A C G T A C G T A C G T A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCATCACAAAASC
--RNAACAATGG-
 A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C
A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCATCACAAAASC
--AAAACAAAGG-
 A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCATCACAAAASC--
CGAAGCACACAAAATA
 A C G T A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCATCACAAAASC--
ATGTCACAACAACAC
 A T C G A G T C C G T A A C G T A G T C C G T A A G T C C G T A C T G A G T C A T C G A A T G C A G T C A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C