Information for 9-CTAATTAGCC (Motif 17)

A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C
Reverse Opposite:
A T C G C T A G A G T C C G A T G T C A C G T A A C G T A C G T C G T A C T A G
p-value:1e-7
log p-value:-1.674e+01
Information Content per bp:1.863
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif41.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets58.4 +/- 25.3bp
Average Position of motif in Background48.6 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0034.1_Gbx2/Jaspar

Match Rank:1
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCC---
AGCGCTAATTAGCGATT
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

PH0131.1_Pax4/Jaspar

Match Rank:2
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCC---
TGAACTAATTAGCCCAC
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C A C G T A C G T A C G T
G C A T T A C G T C G A C G T A A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G A T C A G T C T A G C C T G A G T A C

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCC
NNTAATTAGN-
 A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C
T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T

LHX6/MA0658.1/Jaspar

Match Rank:4
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCC
NCTAATTAGT-
 A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C
T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:5
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGCC
NNTAATTAGN-
 A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T

PAX4/MA0068.2/Jaspar

Match Rank:6
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:CTAATTAGCC
CTAATTAG--
 A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C
A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:7
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCC---
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PH0031.1_Evx1/Jaspar

Match Rank:8
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCC---
AGAACTAATTAGTGGAC
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C A C G T A C G T A C G T
G C T A T C A G G C T A T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T A T C G T A C G C G T A T A G C

PH0155.1_Prrx2/Jaspar

Match Rank:9
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGCC---
AAAGCTAATTAGCGAAA
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C A C G T A C G T A C G T
C G T A T G C A G T C A T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A T G C T G A C G T A C T G A

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----CTAATTAGCC---
ANCGCTAATTAGCGGTN
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T C A G T C G T A A C T G A G T C A T G C A C G T A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G