Information for 8-TTTTRTGGCTGAG (Motif 13)

A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
Reverse Opposite:
A G T C A G C T A G T C C T G A A C T G A G T C G T A C G C T A A G C T T C G A T C G A C G T A C G T A
p-value:1e-8
log p-value:-1.933e+01
Information Content per bp:1.802
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif13.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.3 +/- 30.6bp
Average Position of motif in Background49.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTTRTGGCTGAG
TTTTATGGCTN--
 A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTTTRTGGCTGAG
NGANTTTTATGGCTCN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTRTGGCTGAG
ANTAATTTTATGGCCGN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTTTRTGGCTGAG
NTTTTATGAC----
 A C G T A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTTTRTGGCTGAG
TTTTATTGC----
 A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTTTRTGGCTGAG
NTTTTATTACN---
 A C G T A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:TTTTRTGGCTGAG
------NGCTN--
 A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTTTRTGGCTGAG
TTTTTATTGC----
 A C G T A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTTTRTGGCTGAG
TTTAATTGCN---
 A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTTTRTGGCTGAG
NTTTTATTGG----
 A C G T A C G T A C G T A C G T A G C T C T G A C A G T A C T G A C T G A G T C A G C T A C T G C T G A C T A G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T