Information for 1-GCTTTGCCAG (Motif 3)

A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G
Reverse Opposite:
A G T C G C A T A C T G A T C G T G A C T G C A T C G A G C T A A T C G T G A C
p-value:1e-12
log p-value:-2.840e+01
Information Content per bp:1.652
Number of Target Sequences with motif114.0
Percentage of Target Sequences with motif13.92%
Number of Background Sequences with motif3277.2
Percentage of Background Sequences with motif6.79%
Average Position of motif in Targets53.6 +/- 26.1bp
Average Position of motif in Background50.3 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GCTTTGCCAG-
---TTGCCAAG
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFATC2/MA0152.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCTTTGCCAG
--TTTTCCA-
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G
A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GCTTTGCCAG-
--CGTGCCAAG
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GCTTTGCCAG
----TGCCAA
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCTTTGCCAG-
-HTTTCCCASG
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G A C G T
A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCTTTGCCAG-
---TTGACAGC
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G A C G T
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

NFAT5/MA0606.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCTTTGCCAG-
-ATTTTCCATT
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G A C G T
A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCTTTGCCAG--
--GGTGCCAAGT
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTTTGCCAG------
GTATTGACAGCTNNTT
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCTTTGCCAG---
---ATGCCAGACN
 A C T G T A G C C G A T A G C T A C G T A C T G T A G C T G A C C G T A T C A G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C