Information for 13-GGGATTAGGG (Motif 28)

A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C A C G T C G T A C T G A A C G T A G T C A G T C A G T C
p-value:1e-5
log p-value:-1.283e+01
Information Content per bp:1.943
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif22.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets44.3 +/- 27.1bp
Average Position of motif in Background52.4 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC/MA0648.1/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTAGGG
NNGGATTAGN-
 A C G T A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GGGATTAGGG
GGGATTANN-
 A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTAGGG
GNGGATTAGN-
 A C G T A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GGGATTAGGG
RGGATTAR--
 A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTAGGG
VRGGATTARN-
 A C G T A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GGGATTAGGG
GGGATTAA--
 A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGGATTAGGG
NGGGATTA---
 A C G T A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GGGATTAGGG
-GGATTAGC-
 A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GGGATTAGGG---
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GGGATTAGGG---
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A C T G A C T G C T A G C G T A A G C T A C G T C G T A A C T G A C T G A C T G A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C